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The command given in introduction not working #140

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aditya-sarkar441 opened this issue May 6, 2021 · 3 comments
Closed

The command given in introduction not working #140

aditya-sarkar441 opened this issue May 6, 2021 · 3 comments

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@aditya-sarkar441
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aditya-sarkar441 commented May 6, 2021 •
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$ ${HAPPY}/bin/hap.py
example/happy/PG_NA12878_chr21.vcf.gz
example/happy/NA12878_chr21.vcf.gz
-f example/happy/PG_Conf_chr21.bed.gz
-o test

@pkrusche This command is asking for a reference file. What is this reference file and is it present in the example folder ? Can you please look into this error ?
@b-math
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b-math commented Oct 22, 2021 •
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Hi.

In case you did not found it yet: I think it should be the file in example/chr21.fa. Just ran into the same issue today.

@aditya-sarkar441
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Ok thanks!

@edmundmiller
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Still doesn't work because of #163

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@edmundmiller @aditya-sarkar441 @b-math