_output.yml

bookdown::gitbook:
  css: style.css # This is how bookdown knows to look at style.css for formatting
  config:
    toc: # Table of Contents
      before: |
       <img src="img/bioinformatics.ca-logo.svg" width="90%" alt="bioinformatics.ca logo" style="display:block; margin-left:auto; margin-right:auto; margin-top:15px;">
        <li><a href="./">[YOUR WORKSHOP NAME]</a></li>
      after: |
        <h1 id="sponsors">Sponsors</h1>

        <img src="img/sponsors/Your-Sponsor-Here.svg" width=100%> <!--- replace the directory with your sponsor logo --->
        <img src="img/sponsors/Your-Sponsor-Here.svg" width=100%> <!--- replace the directory with your sponsor logo --->
        <img src="img/sponsors/Your-Sponsor-Here.svg" width=100%> <!--- replace the directory with your sponsor logo --->

        <li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>

    # YOU MUST REPLACE THE LINK BELOW - This is a link to your index.Rmd on your GitHub repo, which allows people to make suggestions
    edit: https://github.com/cbw-dev/bookdown-template/blob/main/%s # Go to your index.Rmd page on GitHub, copy and paste the link to it, and add
    # Steps:
    # 1. Go to your index.Rmd page on GitHub, Copy and paste the link to it.
    # 2. Copy and paste the link to it, excluding the "index.Rmd" ending.
    # 3. Add "/%s" to the ending.
    # 4. Replace the above link.

    download: ["pdf", "epub"]
  number_sections: false
bookdown::pdf_book:
  includes:
    in_header: preamble.tex
  latex_engine: xelatex
  citation_package: natbib
  keep_tex: yes
bookdown::epub_book: default