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Error using: pip3.7 install pastis #71

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yliueagle opened this issue May 28, 2020 · 1 comment
Open

Error using: pip3.7 install pastis #71

yliueagle opened this issue May 28, 2020 · 1 comment

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@yliueagle
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yliueagle commented May 28, 2020 •
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Hi,

Thanks for developing this package and I am eager to try it out. While I was installing the package, I got the following error. Do you have suggestion for solving it?

(version of modules:
numpy 1.18.1
pandas 1.0.1
scipy 1.4.1
iced 0.5.7
scikit-learn 0.22.1
autograd 1.3)

pip3.7 install pastis

Collecting pastis
Using cached pastis-0.3.3.tar.gz (374 kB)
Building wheels for collected packages: pastis
Building wheel for pastis (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/setup.py'"'"'; file='"'"'/private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-wheel-i2y_hqtw
cwd: /private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/
Complete output (205 lines):
Warning: Assuming default configuration (pastis/utils/{setup_utils,setup}.py was not found)
Appending pastis.utils configuration to pastis
Ignoring attempt to set 'name' (from 'pastis' to 'pastis.utils')
Appending pastis.optimization configuration to pastis
Ignoring attempt to set 'name' (from 'pastis' to 'pastis.optimization')
Warning: Assuming default configuration (pastis/externals/iced/utils/{setup_utils,setup}.py was not found)
Appending pastis.externals.iced.utils configuration to pastis.externals.iced
Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.utils')
Appending pastis.externals.iced.datasets configuration to pastis.externals.iced
Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.datasets')
non-existing path in 'pastis/externals/iced/io': '../src/cblas'
non-existing path in 'pastis/externals/iced/io': '../src/cblas'
Appending pastis.externals.iced.io configuration to pastis.externals.iced
Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.io')
non-existing path in 'pastis/externals/iced': '../src/cblas'
non-existing path in 'pastis/externals/iced': '../src/cblas'
Appending pastis.externals.iced configuration to pastis.externals
Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.iced')
Appending pastis.externals configuration to pastis
Ignoring attempt to set 'name' (from 'pastis' to 'pastis.externals')
Appending pastis configuration to
Ignoring attempt to set 'name' (from '' to 'pastis')
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "pastis.externals.iced.io.fastio_" sources
building extension "pastis.externals.iced.io.read" sources
building extension "pastis.externals.iced.normalization" sources
building extension "pastis.externals.iced.filter" sources
building data_files sources
build_src: building npy-pkg config files
running build_py
creating build
creating build/lib.macosx-10.14-x86_64-3.7
creating build/lib.macosx-10.14-x86_64-3.7/pastis
copying pastis/algorithms.py -> build/lib.macosx-10.14-x86_64-3.7/pastis
copying pastis/config.py -> build/lib.macosx-10.14-x86_64-3.7/pastis
copying pastis/fastio.py -> build/lib.macosx-10.14-x86_64-3.7/pastis
copying pastis/io.py -> build/lib.macosx-10.14-x86_64-3.7/pastis
copying pastis/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis
copying pastis/setup.py -> build/lib.macosx-10.14-x86_64-3.7/pastis
creating build/lib.macosx-10.14-x86_64-3.7/pastis/utils
copying pastis/utils/bezier.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/utils
copying pastis/utils/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/utils
copying pastis/utils/validation.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/utils
creating build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/poisson_model.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/poisson_structure.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/mds.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/negative_binomial.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/mds_old.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/setup.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/utils.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
copying pastis/optimization/negative_binomial_structure.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/optimization
creating build/lib.macosx-10.14-x86_64-3.7/pastis/externals
copying pastis/externals/test_externals_setup.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals
copying pastis/externals/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals
copying pastis/externals/setup.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals
creating build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced
copying pastis/externals/iced/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced
copying pastis/externals/iced/setup.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced
copying pastis/externals/iced/filter.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced
copying pastis/externals/iced/normalization.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced
creating build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/utils
copying pastis/externals/iced/utils/_genome.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/utils
copying pastis/externals/iced/utils/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/utils
copying pastis/externals/iced/utils/_validation.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/utils
copying pastis/externals/iced/utils/_vis.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/utils
copying pastis/externals/iced/utils/validation.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/utils
creating build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/datasets
copying pastis/externals/iced/datasets/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/datasets
copying pastis/externals/iced/datasets/setup.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/datasets
copying pastis/externals/iced/datasets/dldata.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/datasets
copying pastis/externals/iced/datasets/base.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/datasets
creating build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/io
copying pastis/externals/iced/io/_io_else.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/io
copying pastis/externals/iced/io/init.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/io
copying pastis/externals/iced/io/setup.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/io
copying pastis/externals/iced/io/io_pandas.py -> build/lib.macosx-10.14-x86_64-3.7/pastis/externals/iced/io
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'pastis.externals.iced.io.fastio' extension
compiling C sources
C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers

creating build/temp.macosx-10.14-x86_64-3.7/pastis
creating build/temp.macosx-10.14-x86_64-3.7/pastis/externals
creating build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced
creating build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced/io
compile options: '-I../src/cblas -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/[email protected]/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
clang: pastis/externals/iced/io/fastio_.c
In file included from pastis/externals/iced/io/fastio_.c:435:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
In file included from pastis/externals/iced/io/fastio_.c:438:
pastis/externals/iced/io/write.c:8:11: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare]
while(i != n_lines){
~ ^ ~~~~~~~
pastis/externals/iced/io/write.c:25:11: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare]
while(i != n_lines){
~ ^ ~~~~~~~
pastis/externals/iced/io/fastio_.c:6609:65: error: too many arguments to function call, expected 3, have 4
return (((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~
/Library/Developer/CommandLineTools/usr/lib/clang/10.0.1/include/stddef.h:105:16: note: expanded from macro 'NULL'
define NULL ((void)0)
^~~~~~~~~~
pastis/externals/iced/io/fastio_.c:6874:21: error: no member named 'exc_type' in 'struct ts'
*type = tstate->exc_type;
~~~~~~ ^
pastis/externals/iced/io/fastio.c:6875:22: error: no member named 'exc_value' in 'struct ts'; did you mean 'curexc_value'?
*value = tstate->exc_value;
^~~~~~~~~
curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
PyObject *curexc_value;
^
pastis/externals/iced/io/fastio.c:6876:19: error: no member named 'exc_traceback' in 'struct ts'; did you mean 'curexc_traceback'?
*tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
PyObject *curexc_traceback;
^
pastis/externals/iced/io/fastio.c:6883:24: error: no member named 'exc_type' in 'struct ts'
tmp_type = tstate->exc_type;
~~~~~~ ^
pastis/externals/iced/io/fastio.c:6884:25: error: no member named 'exc_value' in 'struct ts'; did you mean 'curexc_value'?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
PyObject *curexc_value;
^
pastis/externals/iced/io/fastio.c:6885:22: error: no member named 'exc_traceback' in 'struct ts'; did you mean 'curexc_traceback'?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
PyObject *curexc_traceback;
^
pastis/externals/iced/io/fastio.c:6886:13: error: no member named 'exc_type' in 'struct ts'
tstate->exc_type = type;
~~~~~~ ^
pastis/externals/iced/io/fastio.c:6887:13: error: no member named 'exc_value' in 'struct ts'; did you mean 'curexc_value'?
tstate->exc_value = value;
^~~~~~~~~
curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
PyObject *curexc_value;
^
pastis/externals/iced/io/fastio.c:6888:13: error: no member named 'exc_traceback' in 'struct ts'; did you mean 'curexc_traceback'?
tstate->exc_traceback = tb;
^~~~~~~~~~~~~
curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
PyObject *curexc_traceback;
^
pastis/externals/iced/io/fastio.c:6943:24: error: no member named 'exc_type' in 'struct ts'
tmp_type = tstate->exc_type;
~~~~~~ ^
pastis/externals/iced/io/fastio.c:6944:25: error: no member named 'exc_value' in 'struct ts'; did you mean 'curexc_value'?
tmp_value = tstate->exc_value;
^~~~~~~~~
curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
PyObject *curexc_value;
^
pastis/externals/iced/io/fastio.c:6945:22: error: no member named 'exc_traceback' in 'struct ts'; did you mean 'curexc_traceback'?
tmp_tb = tstate->exc_traceback;
^~~~~~~~~~~~~
curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
PyObject *curexc_traceback;
^
pastis/externals/iced/io/fastio.c:6946:13: error: no member named 'exc_type' in 'struct ts'
tstate->exc_type = local_type;
~~~~~~ ^
pastis/externals/iced/io/fastio.c:6947:13: error: no member named 'exc_value' in 'struct ts'; did you mean 'curexc_value'?
tstate->exc_value = local_value;
^~~~~~~~~
curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
PyObject *curexc_value;
^
pastis/externals/iced/io/fastio.c:6948:13: error: no member named 'exc_traceback' in 'struct ts'; did you mean 'curexc_traceback'?
tstate->exc_traceback = local_tb;
^~~~~~~~~~~~~
curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
PyObject *curexc_traceback;
^
3 warnings and 16 errors generated.
error: Command "clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I../src/cblas -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/[email protected]/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c pastis/externals/iced/io/fastio.c -o build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced/io/fastio_.o -MMD -MF build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced/io/fastio_.o.d" failed with exit status 1

ERROR: Failed building wheel for pastis
Running setup.py clean for pastis
Failed to build pastis
Installing collected packages: pastis
Running setup.py install for pastis ... error
ERROR: Command errored out with exit status 1:
command: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/setup.py'"'"'; file='"'"'/private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-record-yniji64f/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.7m/pastis
cwd: /private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/
Complete output (157 lines):
Warning: Assuming default configuration (pastis/utils/{setup_utils,setup}.py was not found)
Appending pastis.utils configuration to pastis
Ignoring attempt to set 'name' (from 'pastis' to 'pastis.utils')
Appending pastis.optimization configuration to pastis
Ignoring attempt to set 'name' (from 'pastis' to 'pastis.optimization')
Warning: Assuming default configuration (pastis/externals/iced/utils/{setup_utils,setup}.py was not found)
Appending pastis.externals.iced.utils configuration to pastis.externals.iced
Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.utils')
Appending pastis.externals.iced.datasets configuration to pastis.externals.iced
Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.datasets')
non-existing path in 'pastis/externals/iced/io': '../src/cblas'
non-existing path in 'pastis/externals/iced/io': '../src/cblas'
Appending pastis.externals.iced.io configuration to pastis.externals.iced
Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.io')
non-existing path in 'pastis/externals/iced': '../src/cblas'
non-existing path in 'pastis/externals/iced': '../src/cblas'
Appending pastis.externals.iced configuration to pastis.externals
Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.iced')
Appending pastis.externals configuration to pastis
Ignoring attempt to set 'name' (from 'pastis' to 'pastis.externals')
Appending pastis configuration to
Ignoring attempt to set 'name' (from '' to 'pastis')
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "pastis.externals.iced.io.fastio_" sources
building extension "pastis.externals.iced.io.read" sources
building extension "pastis.externals.iced.normalization" sources
building extension "pastis.externals.iced.filter" sources
building data_files sources
build_src: building npy-pkg config files
running build_py
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'pastis.externals.iced.io.fastio_' extension
compiling C sources
C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers

creating build/temp.macosx-10.14-x86_64-3.7/pastis
creating build/temp.macosx-10.14-x86_64-3.7/pastis/externals
creating build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced
creating build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced/io
compile options: '-I../src/cblas -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/[email protected]/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
clang: pastis/externals/iced/io/fastio_.c
In file included from pastis/externals/iced/io/fastio_.c:435:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:
/usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
In file included from pastis/externals/iced/io/fastio_.c:438:
pastis/externals/iced/io/write.c:8:11: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare]
  while(i != n_lines){
        ~ ^  ~~~~~~~
pastis/externals/iced/io/write.c:25:11: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare]
  while(i != n_lines){
        ~ ^  ~~~~~~~
pastis/externals/iced/io/fastio_.c:6609:65: error: too many arguments to function call, expected 3, have 4
    return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                     ^~~~
/Library/Developer/CommandLineTools/usr/lib/clang/10.0.1/include/stddef.h:105:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^~~~~~~~~~
pastis/externals/iced/io/fastio_.c:6874:21: error: no member named 'exc_type' in 'struct _ts'
    *type = tstate->exc_type;
            ~~~~~~  ^
pastis/externals/iced/io/fastio_.c:6875:22: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
    *value = tstate->exc_value;
                     ^~~~~~~~~
                     curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
    PyObject *curexc_value;
              ^
pastis/externals/iced/io/fastio_.c:6876:19: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
    *tb = tstate->exc_traceback;
                  ^~~~~~~~~~~~~
                  curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
    PyObject *curexc_traceback;
              ^
pastis/externals/iced/io/fastio_.c:6883:24: error: no member named 'exc_type' in 'struct _ts'
    tmp_type = tstate->exc_type;
               ~~~~~~  ^
pastis/externals/iced/io/fastio_.c:6884:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
    tmp_value = tstate->exc_value;
                        ^~~~~~~~~
                        curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
    PyObject *curexc_value;
              ^
pastis/externals/iced/io/fastio_.c:6885:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
    tmp_tb = tstate->exc_traceback;
                     ^~~~~~~~~~~~~
                     curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
    PyObject *curexc_traceback;
              ^
pastis/externals/iced/io/fastio_.c:6886:13: error: no member named 'exc_type' in 'struct _ts'
    tstate->exc_type = type;
    ~~~~~~  ^
pastis/externals/iced/io/fastio_.c:6887:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
    tstate->exc_value = value;
            ^~~~~~~~~
            curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
    PyObject *curexc_value;
              ^
pastis/externals/iced/io/fastio_.c:6888:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
    tstate->exc_traceback = tb;
            ^~~~~~~~~~~~~
            curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
    PyObject *curexc_traceback;
              ^
pastis/externals/iced/io/fastio_.c:6943:24: error: no member named 'exc_type' in 'struct _ts'
    tmp_type = tstate->exc_type;
               ~~~~~~  ^
pastis/externals/iced/io/fastio_.c:6944:25: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
    tmp_value = tstate->exc_value;
                        ^~~~~~~~~
                        curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
    PyObject *curexc_value;
              ^
pastis/externals/iced/io/fastio_.c:6945:22: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
    tmp_tb = tstate->exc_traceback;
                     ^~~~~~~~~~~~~
                     curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
    PyObject *curexc_traceback;
              ^
pastis/externals/iced/io/fastio_.c:6946:13: error: no member named 'exc_type' in 'struct _ts'
    tstate->exc_type = local_type;
    ~~~~~~  ^
pastis/externals/iced/io/fastio_.c:6947:13: error: no member named 'exc_value' in 'struct _ts'; did you mean 'curexc_value'?
    tstate->exc_value = local_value;
            ^~~~~~~~~
            curexc_value
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:240:15: note: 'curexc_value' declared here
    PyObject *curexc_value;
              ^
pastis/externals/iced/io/fastio_.c:6948:13: error: no member named 'exc_traceback' in 'struct _ts'; did you mean 'curexc_traceback'?
    tstate->exc_traceback = local_tb;
            ^~~~~~~~~~~~~
            curexc_traceback
/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m/pystate.h:241:15: note: 'curexc_traceback' declared here
    PyObject *curexc_traceback;
              ^
3 warnings and 16 errors generated.
error: Command "clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -I../src/cblas -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/[email protected]/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c pastis/externals/iced/io/fastio_.c -o build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced/io/fastio_.o -MMD -MF build/temp.macosx-10.14-x86_64-3.7/pastis/externals/iced/io/fastio_.o.d" failed with exit status 1
----------------------------------------

ERROR: Command errored out with exit status 1: /usr/local/opt/python/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/setup.py'"'"'; file='"'"'/private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-install-p4sk008d/pastis/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/4f/v6fzk6ss6lvdkzqp9y8wwfg00000gn/T/pip-record-yniji64f/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.7m/pastis Check the logs for full command output.
@NelleV
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NelleV commented Sep 21, 2020

Hello,
So sorry not to have responded sooner. What OS are you working on? It seems the compiler used is clang, and the issues might be fixed using gcc.
Thanks,
Nelle

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