From 7e976fd3c341c7bc1561b664861538df8989a765 Mon Sep 17 00:00:00 2001
From: Steven Weaver <sweaver@temple.edu>
Date: Mon, 14 Jun 2021 17:14:22 -0400
Subject: [PATCH] redirecting meme stdout to progress file; calling status
 update

---
 app/hyphyjob.js  | 1 +
 app/meme/meme.sh | 4 ++--
 package.json     | 2 +-
 3 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/app/hyphyjob.js b/app/hyphyjob.js
index 5866ac90..7e6cdba2 100644
--- a/app/hyphyjob.js
+++ b/app/hyphyjob.js
@@ -82,6 +82,7 @@ hyphyJob.prototype.spawn = function() {
         // No status update could be read,
         // but this could be due to the job just starting
         self.log("read progress file, but no data");
+        self.onStatusUpdate(data);
       }
     });
   });
diff --git a/app/meme/meme.sh b/app/meme/meme.sh
index 0a5a65cf..da0490a0 100755
--- a/app/meme/meme.sh
+++ b/app/meme/meme.sh
@@ -22,7 +22,7 @@ export HYPHY_PATH=$HYPHY_PATH
 
 trap 'echo "Error" > $STATUS_FILE; exit 1' ERR
 
-echo "mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE"
-mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE
+echo "mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE >> $PROGRESS_FILE"
+mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE >> $PROGRESS_FILE
 
 echo "Completed" > $STATUS_FILE
diff --git a/package.json b/package.json
index 3cea4cde..14b55b37 100644
--- a/package.json
+++ b/package.json
@@ -1,7 +1,7 @@
 {
   "name": "datamonkey-js-server",
   "description": "",
-  "version": "2.1.1",
+  "version": "2.1.2",
   "engines": {
     "node": ">=13"
   },