Calculate the five categories for each state #35
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This pull request includes changes to the
cfa_rt_postprocessing/main_functions.py
file to add functionality for calculating and saving categories from sample data. The most important changes include the addition of a new function for calculating categories and the integration of this function into the existing workflow.New functionality:
calculate_categories
to calculate five categories for eachgeo_value
,disease
, andreference_date
from sample data usingduckdb
. This function returns a DataFrame with the calculated categories.Workflow integration:
calculate_categories
function into themerge_and_render_anomaly
function to calculate categories from final samples and save the results as both parquet and CSV files.I figured that small PRs are better than big ones.