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Fixes to reflect changes in ClinVar submission schema & maintenance

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@northwestwitch northwestwitch released this 14 Feb 10:09
· 122 commits to main since this release

[2.4]

Changed

  • Updated version of external images in GitHub actions
  • Updated API submission schema to the latest
  • Demo variant to take care of "Somatic mutation" no longer available among Mode of inheritance choices
  • clinicalSignificance.clinicalSignificanceDescription value extracted from Clinical significance or Germline classification column
  • clinicalSignificance.comment values extracted from Comment on clinical significance or Comment on classification column

Fixed

  • Bump certifi from 2022.12.7 to 2023.7.22
  • Description of the response returned by dry run endpoint in README file
  • Migrate from deprecated pkg_resources lib to importlib_resources
  • Updated python-multipart from 0.0.5 to 0.0.7 to address security alert by dependabot