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Merge pull request #17 from HolyLab/compathelper/new_version/2022-05-… #47

Merge pull request #17 from HolyLab/compathelper/new_version/2022-05-…

Merge pull request #17 from HolyLab/compathelper/new_version/2022-05-… #47

Re-run triggered January 9, 2025 19:50
Status Failure
Total duration 2m 41s
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CI.yml

on: push
Matrix: test
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8 errors, 4 warnings, and 4 notices
Julia 1.6 - ubuntu-latest - x64 - push
Process completed with exit code 1.
Julia 1 - ubuntu-latest - x64 - push
Process completed with exit code 1.
Documentation: src/types.jl#L24
doctest failure in ~/work/EcoTrialStructure.jl/EcoTrialStructure.jl/src/types.jl:24-34 ```jldoctest demo julia> tframes, df = ct[175ms..310ms, :]; # frames range nearest to given start..stop times julia> tframes 200.0f0 ms..300.0f0 ms julia> df 2×2 Matrix{Float64}: -0.1 0.7 0.2 0.6 ``` Subexpression: tframes Evaluated output: 200.0f0 ms .. 300.0f0 ms Expected output: 200.0f0 ms..300.0f0 ms diff = Warning: Diff output requires color. 200.0f0 ms..300.0f0 ms .. 300.0f0 ms
Documentation: src/types.jl#L39
doctest failure in ~/work/EcoTrialStructure.jl/EcoTrialStructure.jl/src/types.jl:39-50 ```jldoctest demo julia> tframes, df = ct[FrameSeq(175ms, 3), :]; # start nearest to 175ms, and grab 3 frames' worth julia> tframes 200.0f0 ms..400.0f0 ms julia> df 3×2 OffsetArray(::Matrix{Float64}, 0:2, 1:2) with eltype Float64 with indices 0:2×1:2: -0.1 0.7 0.2 0.6 0.1 0.5 ``` Subexpression: tframes Evaluated output: 200.0f0 ms .. 400.0f0 ms Expected output: 200.0f0 ms..400.0f0 ms diff = Warning: Diff output requires color. 200.0f0 ms..400.0f0 ms .. 400.0f0 ms
Documentation: ../../../.julia/packages/Documenter/bYYzK/src/Documenter.jl#L652
Git failed to fetch [email protected]:HolyLab/EcoTrialStructure.jl This can be caused by a DOCUMENTER_KEY variable that is not correctly set up. Make sure that the environment variable is properly set up as a Base64-encoded string of the SSH private key. You may need to re-generate the keys with DocumenterTools.
Documentation: ../../../.julia/packages/Documenter/bYYzK/src/Documenter.jl#L777
Failed to push: exception = failed process: Process(setenv(`/usr/bin/git fetch upstream`,["DOCUMENTER_KEY=***", "PATH=/opt/hostedtoolcache/julia/1.11.2/x64/bin:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin", "DOTNET_SKIP_FIRST_TIME_EXPERIENCE=1", "GITHUB_RUN_NUMBER=47", "GITHUB_REF_NAME=main", "RUNNER_ARCH=X64", "STATS_PIP=false", "PERFLOG_LOCATION_SETTING=RUNNER_PERFLOG", "ACCEPT_EULA=Y", "GOROOT_1_21_X64=/opt/hostedtoolcache/go/1.21.13/x64", "ANT_HOME=/usr/share/ant", "RUNNER_USER=runner", "LEIN_HOME=/usr/local/lib/lein", "GITHUB_REPOSITORY_ID=436761869", "GITHUB_ACTOR=kdw503", "GITHUB_WORKFLOW_REF=HolyLab/EcoTrialStructure.jl/.github/workflows/CI.yml@refs/heads/main", "ANDROID_NDK_LATEST_HOME=/usr/local/lib/android/sdk/ndk/27.2.12479018", "SYSTEMD_EXEC_PID=601", "RUNNER_ENVIRONMENT=github-hosted", "OPENBLAS_DEFAULT_NUM_THREADS=1", "GIT_TEMPLATE_DIR=/usr/share/git-core/templates", "STATS_D_D=true", "USER=runner", "CONDA=/usr/share/miniconda", "JULIA_PKG_SERVER_REGISTRY_PREFERENCE=eager", "GOROOT_1_23_X64=/opt/hostedtoolcache/go/1.23.4/x64", "GITHUB_REF_PROTECTED=false", "GITHUB_SHA=b5f314cf9ed0fa165da07ef9e551bf0fc3eebe6c", "JAVA_HOME=/usr/lib/jvm/temurin-11-jdk-amd64", "GITHUB_API_URL=https://api.github.com", "GITHUB_RUN_ATTEMPT=2", "GITHUB_ACTIONS=true", "STATS_V3PS=true", "VCPKG_INSTALLATION_ROOT=/usr/local/share/vcpkg", "STATS_VMFE=true", "STATS_EXT=true", "ANDROID_SDK_ROOT=/usr/local/lib/android/sdk", "SWIFT_PATH=/usr/share/swift/usr/bin", "GITHUB_ENV=/home/runner/work/_temp/_runner_file_commands/set_env_773f940b-edf0-4217-8f92-cfce207de634", "JAVA_HOME_17_X64=/usr/lib/jvm/temurin-17-jdk-amd64", "GITHUB_ACTION_PATH=/home/runner/work/_actions/julia-actions/julia-docdeploy/v1", "STATS_D_TC=true", "RUNNER_PERFLOG=/home/runner/perflog", "RUNNER_NAME=GitHub Actions 14", "EDGEWEBDRIVER=/usr/local/share/edge_driver", "GITHUB_RUN_ID=12697279812", "GHCUP_INSTALL_BASE_PREFIX=/usr/local", "ImageOS=ubuntu22", "NVM_DIR=/home/runner/.nvm", "GIT_SSH_COMMAND=ssh -F /tmp/jl_u95aOs", "GITHUB_HEAD_REF=", "GITHUB_RETENTION_DAYS=90", "GITHUB_SERVER_URL=https://github.com", "GITHUB_OUTPUT=/home/runner/work/_temp/_runner_file_commands/set_output_773f940b-edf0-4217-8f92-cfce207de634", "STATS_UE=true", "GITHUB_JOB=docs", "DEBIAN_FRONTEND=noninteractive", "RUNNER_TRACKING_ID=github_d7ef35a8-15ca-4b4d-9445-75147c254a24", "RUNNER_TOOL_CACHE=/opt/hostedtoolcache", "HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS=3650", "AZURE_EXTENSION_DIR=/opt/az/azcliextensions", "HOMEBREW_NO_AUTO_UPDATE=1", "CHROMEWEBDRIVER=/usr/local/share/chromedriver-linux64", "GITHUB_ACTION_REPOSITORY=", "GITHUB_WORKFLOW=CI", "GITHUB_ACTION=__julia-actions_julia-docdeploy", "HOME=/home/runner", "JAVA_HOME_8_X64=/usr/lib/jvm/temurin-8-jdk-amd64", "GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json", "GITHUB_STEP_SUMMARY=/home/runner/work/_temp/_runner_file_commands/step_summary_773f940b-edf0-4217-8f92-cfce207de634", "SGX_AESM_ADDR=1", "GITHUB_REF=refs/heads/main", "GITHUB_REPOSITORY=HolyLab/EcoTrialStructure.jl", "INVOCATION_ID=3cb0a45c6c294114938f2d65e97f8cf4", "ImageVersion=20250105.1.0", "JAVA_HOME_21_X64=/usr/lib/jvm/temurin-21-jdk-amd64", "ANDROID_NDK=/usr/local/lib/android/sdk/ndk/27.2.12479018", "LANG=C.UTF-8", "STATS_D=true", "GITHUB_GRAPHQL_URL=https://api.github.com/graphql", "SHLVL=1", "DOTNET_MULTILEVEL_LOOKUP=0", "XDG_RUNTIME_DIR=/run/user/1001", "GOROOT_1_22_X64=/opt/hostedtoolcache/go/1.22.10/x64", "RUNNER_WORKSPACE=/home/runner/work/EcoTrialStructure.jl", "GITHUB_STATE=/home/runner/work/_temp/_runner_file_commands/save_state_773f940b-edf0-4217-8f92-cfce207de634", "GITHUB_BASE_REF=", "_=/opt/hostedtoolcache/julia/1.11.2/x64/bin/julia", "GRADLE_HOME=/usr/share/gradle-8.12", "GITHUB_ACTION_REF=", "DEPLOYMENT_BASEPATH=/opt/runner", "PIPX_HOME=/opt/pipx", "GITHUB_REPOSITORY_OWNER_ID=13556067", "GITHUB_ACTOR_ID=23037534", "ANDROID_NDK_
Documentation
Process completed with exit code 1.
Julia nightly - ubuntu-latest - x64 - push
Process completed with exit code 1.
Julia nightly - ubuntu-latest - x64 - push
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
Julia 1 - ubuntu-latest - x64 - push
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
Julia 1.6 - ubuntu-latest - x64 - push
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
Documentation: ../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
1 docstring not included in the manual: EcoTrialStructure.EcoTrialStructure These are docstrings in the checked modules (configured with the modules keyword) that are not included in @docs or @autodocs blocks.
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache To ignore, set input `ignore-no-cache: true`
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache To ignore, set input `ignore-no-cache: true`
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache To ignore, set input `ignore-no-cache: true`
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache To ignore, set input `ignore-no-cache: true`