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jcfr committed May 25, 2023
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Expand Up @@ -46,7 +46,7 @@ We built a data-glove that tracks hand movements. Our goal is to connect it to S

Result:

![Result](20190201_095221.gif)
![Result](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW30__Data-glove_for_virtual_operations__20190201_095221.gif)

# Background and References

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2 changes: 1 addition & 1 deletion PW36_2022_Virtual/Projects/TMRCatheterNavigation/README.md
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Expand Up @@ -48,7 +48,7 @@ A vessel model will be reconstructed from a preoperative 3D CT. During the opera

![Experimental setup](img1.png)
![Experimental setup](img2.png)
![Experimental setup](video.gif)
![Experimental setup](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW36__TMRCatheterNavigation__video.gif)

# Background and References

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2 changes: 1 addition & 1 deletion PW37_2022_Virtual/Projects/SlicerTMS/README.md
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Expand Up @@ -44,7 +44,7 @@ Real-time visualization of an electric field (E-field) for transcranial magnetic

#### Coil moving and updating the electric field on the brain surface inside slicer:

<img src="./tms_vis.gif" width="500" alt="Brain surface coil moving">
<img src="https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW37__SlicerTMS__tms_vis.gif" width="500" alt="Brain surface coil moving">


#### Started WebSocket Tests: we can interact with the red, green and yellow slices with the new websocket connection:
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Expand Up @@ -55,6 +55,7 @@ as possible.
and image information back to server.

## Next Steps

1. Need to add scoring functionality (DONE)
2. Need to add way to mark image as defective (DONE)
3. Need to add way to clear Previously added ROIs (DONE w/help from erikz)
Expand All @@ -65,15 +66,18 @@ as possible.


# Illustrations

<p align="center">
<img src="work_flow.png" />
</p>

Demo video from start of project:
![](SimplifiedROITool.gif)
![](roi-web-tool-example.gif)

Demo video from end of project:
![](FinalROITool_1.gif)
![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW37__StreamlinedROIAnnotationTool__FinalROITool_1.gif)

# Background and References

<!-- If you developed any software, include link to the source code repository. If possible, also add links to sample data, and to any relevant publications. -->
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Expand Up @@ -18,7 +18,7 @@ https://drive.google.com/file/d/1A7-8Ru0uTJHFFa17rZtkBpvNhJao_F7x/view?usp=share
Creating a cohort or tagging DICOM images is a very time-consuming and error-prone procedure.
In this project, we are extending the functionality of the so-called Gallery View within Kaapana.

![](NA-MIC.gif)
![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__KaapanaFastViewingAndTaggingOfDICOMImages__NA-MIC.gif)

## Approach and Plan

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# Background and References

https://github.com/kaapana/kaapana
https://github.com/kaapana/kaapana
2 changes: 2 additions & 0 deletions PW38_2023_GranCanaria/Projects/MONAILabel2bundle/README.md
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Expand Up @@ -67,12 +67,14 @@ Figure 1 - Full CT segmentation on subject from spleen decathalon data

Figure 2 - Comparison on spleen decathalon data of the MONAI full CT segmentation bundle we created (left) to the output TotalSegmentator produces (right)
[monai_bundle_vs_total_seg_spleen.webm](https://user-images.githubusercontent.com/59979551/216606510-047a0105-17ca-4765-8186-4132edf2c0e9.webm)
![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__MONAILabel2bundle__monai_bundle_vs_total_seg_spleen.gif)

Figure 3 - Full CT segmentation on subject from IDC
![02_03_23_full_ct_segmentation_success_idc](https://user-images.githubusercontent.com/59979551/216612414-649813e5-945b-4719-aaa8-8954aeb44d18.JPG)

Figure 4 - Comparison on IDC data of the MONAI full CT segmentation bundle we created (left) to the output TotalSegmentator produces (right)
[monai_bundle_vs_total_seg_idc.webm](https://user-images.githubusercontent.com/59979551/216612449-013d7dad-7bc6-43b0-9780-0c9f9b848007.webm)
![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__MONAILabel2bundle__monai_bundle_vs_total_seg_idc.gif)

## Discussion notes

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Expand Up @@ -45,8 +45,8 @@ The set of cameras to integrate includes (but not limited to): visible light USB
![Some more images](Example2.jpg)
-->
Fig. 1: Integration of Thermal Expert EV2 & PCO Ultraviolet Cameras (OpenIGTLink)
[TEEV2PCOUV-2.gif](https://github.com/NA-MIC/ProjectWeek/blob/master/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/TEEV2PCOUV-2.gif)
<center><img src="TEEV2PCOUV-2.gif" width="652" height="356" ></img></center>
[TEEV2PCOUV-2.gif](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__MultiSpectralSensorIntegration__TEEV2PCOUV-2.gif)
<center><img src="https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__MultiSpectralSensorIntegration__TEEV2PCOUV-2.gif" width="652" height="356" ></img></center>

# Background and References

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