Merge pull request #233 from NationalGenomicsInfrastructure/monthly

Monthly merge March 2024
NationalGenomicsInfrastructure · Mar 25, 2024 · 4ce2056 · 4ce2056
2 parents 5d87943 + ba15261
commit 4ce2056
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Showing 4 changed files with 8 additions and 5 deletions.
diff --git a/roles/multiqc/defaults/main.yml b/roles/multiqc/defaults/main.yml
@@ -1,7 +1,7 @@
 multiqc_repo: https://github.com/ewels/MultiQC.git
 multiqc_dest: "{{ sw_path }}/multiqc"
-multiqc_version: "v1.19"
+multiqc_version: "v1.21"
 
 multiqc_ngi_repo: https://github.com/NationalGenomicsInfrastructure/MultiQC_NGI.git
 multiqc_ngi_dest: "{{ sw_path }}/multiqc_ngi"
-multiqc_ngi_version: "0.7.1"
+multiqc_ngi_version: "0.7.2"
diff --git a/roles/ngi_pipeline/templates/fastq_screen.miarka.conf.j2 b/roles/ngi_pipeline/templates/fastq_screen.miarka.conf.j2
@@ -77,3 +77,6 @@ DATABASE    PhiX   {{ igenomes_path }}/PhiX/Illumina/RTA/Sequence/Bowtie2Index/g
 
 ##S. cerevisiae
 DATABASE    Scerevisiae   {{ igenomes_path }}/Saccharomyces_cerevisiae/Ensembl/EF4/Sequence/Bowtie2Index/genome BOWTIE2
+
+##L. sinapis
+DATABASE    Lsinapis   {{ deployment_root }}/common/ngi/share/Fastq_screen_references/Leptidea_sinapis/genome BOWTIE2
diff --git a/roles/ngi_reports/defaults/main.yml b/roles/ngi_reports/defaults/main.yml
@@ -1,7 +1,7 @@
 ---
 ngi_reports_repo: https://github.com/NationalGenomicsInfrastructure/ngi_reports.git
 ngi_reports_dest: "{{ sw_path }}/ngi_reports"
-ngi_reports_version: 84c35b22d9997e4189e2a5e6ec4a5fc281df51e7
+ngi_reports_version: e09e3f720199b9875f30d4429b4bf35211479747
 ngi_reports_log: "{{ ngi_log_path }}/ngi_reports.log"
 
 ngi_mdx_outline_repo: https://github.com/NationalGenomicsInfrastructure/mdx_outline.git

diff --git a/roles/taca/defaults/main.yml b/roles/taca/defaults/main.yml
@@ -5,11 +5,11 @@ taca_ngi_version: ac0abf07b40fec8ff8b8e5918eb7fcb28c9fd3dd
 
 flowcell_parser_repo: https://github.com/SciLifeLab/flowcell_parser.git
 flowcell_parser_dest: "{{ sw_path }}/flowcell_parser"
-flowcell_parser_version: 322abe3ea3bbd4aca1abf090dd51df0c5eca3db2
+flowcell_parser_version: cfe18abb6b758a6389a9d6aa75f1866d517dc36e
 
 taca_repo: https://github.com/SciLifeLab/TACA.git
 taca_dest: "{{ sw_path }}/TACA"
-taca_version: 033e90a95d786ed307aeef3b37aee4b61896c008
+taca_version: 802cc7867bd16227e90e1d5b90136170ec712d84
 
 ngi_pipeline_analysisdir: "{{ ngi_pipeline_workdir }}/ANALYSIS"
 ngi_pipeline_datadir: "{{ ngi_pipeline_workdir }}/DATA"