v2.8.7

• fix:
  • ftINIT could have removed metabolites that are required for specific tasks.
  • importModel allows SBML without a specified objective function (this is not valid SBML, but will be tolerated).
  • Swap soplex with scip as solver. The soplex option introduced in release 2.8.5 should not be used for MILP, scip is dedicated for these problems. Precompiled binaries for Windows are provided (downloaded upon request), further installation instructions are mentioned in the Wiki.
  • ravenCobraWrapper properly makes comps and compNames fields when lacking in COBRA model.
  • writeYAMLmodel can deal with mixture of nested and not-nested cell arrays of subsystems (as COBRA models can have).
  • extractMiriam should allow cell array of multiple miriamNames as input.
  • checkInstallation correctly makes binaries executable on Ubuntu (solves #527)
• refactor:
  • Reduce the default verbosity and number of messages to the command window for a few functions.