diff cleaning strategy

broadinstitute · Jan 13, 2025 · 7d86630 · 7d86630
1 parent ef4be32
commit 7d86630
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pipes/WDL/tasks/tasks_ncbi.wdl b/pipes/WDL/tasks/tasks_ncbi.wdl
@@ -828,7 +828,7 @@ task biosample_to_genbank {
 
             # sanitize sequence IDs to match fasta headers
             if "~{sanitize_seq_ids}".lower() == 'true':
-                outrow['Sequence_ID'] = re.sub(r'[^0-9A-Za-z!#$%&+./:;?@^_|~-]', '_', outrow['Sequence_ID'])
+                outrow['Sequence_ID'] = re.sub(r'[^0-9A-Za-z!_-]', '-', outrow['Sequence_ID'])
 
             # write entry for this sample
             sample_name = outrow['Sequence_ID']