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Data Science in Systems Biology

The research group Data Science in Systems Biology at the School of Life Sciences, Technical University of Munich

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  1. OpenLabFramework OpenLabFramework Public archive

    A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth

    JavaScript 21 6

  2. data-leakage-ppi-prediction data-leakage-ppi-prediction Public

    Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'

    C++ 21 1

  3. TF-Prioritizer TF-Prioritizer Public

    Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

    Java 13

  4. SPONGE SPONGE Public

    Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference

    R 11 9

  5. BiCoN BiCoN Public

    Network Constrained Biclustering PyPI package

    Python 10 3

  6. namco namco Public

    R 9 3

Repositories

Showing 10 of 88 repositories
  • Tangram_Refinement_Strategies Public
    daisybio/Tangram_Refinement_Strategies’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jan 23, 2025
  • PRONE Public

    R Package for preprocessing, normalizing, and analyzing proteomics data

    daisybio/PRONE’s past year of commit activity
    R 2 GPL-3.0 1 0 0 Updated Jan 23, 2025
  • SPONGE-web-backend Public
    daisybio/SPONGE-web-backend’s past year of commit activity
    Python 0 GPL-3.0 0 0 6 Updated Jan 23, 2025
  • DIGGER Public Forked from louadi/DIGGER

    Fork for developing Digger 2.0

    daisybio/DIGGER’s past year of commit activity
    Python 0 GPL-3.0 3 3 (1 issue needs help) 0 Updated Jan 23, 2025
  • PPI_prediction_study Public
    daisybio/PPI_prediction_study’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 23, 2025
  • SPONGE-web-frontend Public
    daisybio/SPONGE-web-frontend’s past year of commit activity
    TypeScript 0 0 0 1 Updated Jan 23, 2025
  • PRONE.Shiny Public

    Code of the R Shiny App of the PRONE R Package.

    daisybio/PRONE.Shiny’s past year of commit activity
    R 1 GPL-3.0 0 1 0 Updated Jan 21, 2025
  • drevalpy Public

    DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

    daisybio/drevalpy’s past year of commit activity
    Python 5 GPL-3.0 1 20 (1 issue needs help) 6 Updated Jan 15, 2025
  • RPs_MPs Public
    daisybio/RPs_MPs’s past year of commit activity
    R 1 0 0 0 Updated Jan 14, 2025
  • Dimmer Public
    daisybio/Dimmer’s past year of commit activity
    Java 0 GPL-3.0 1 0 2 Updated Jan 14, 2025
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