UPDATE: added barcoding option to ToulligQC module (#5423) #2
fellen31test.yml
on: push
Matrix: nf-test
Waiting for pending jobs
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
3s
Annotations
175 errors and 3 warnings
|
pytest (ashlar, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (ashlar, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (ashlar, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/bedtointervallist, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/bedtointervallist, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/bedtointervallist, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/cnnscorevariants, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/determinegermlinecontigploidy, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/germlinecnvcaller, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/cnnscorevariants, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/postprocessgermlinecnvcalls, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/postprocessgermlinecnvcalls, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (gatk4/germlinecnvcaller, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (shapeit5/ligate, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (shapeit5/ligate, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (subworkflows/vcf_phase_shapeit5, docker)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (shapeit5/ligate, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (subworkflows/vcf_phase_shapeit5, singularity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
pytest (subworkflows/vcf_phase_shapeit5, conda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (ale)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (ashlar)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (angsd/gl)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bakta/bakta)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bamclipper)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bakta/baktadbdownload)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bamstats/generalstats)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bases2fastq)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bcftools/filter)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bcftools/stats)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bcftools/sort)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bedtools/merge)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bwamem2/index)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bedtools/sort)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bowtie2/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (celesta)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (bwamem2/mem)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cellpose)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cellranger/mkgtf)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cellranger/count)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cellranger/mkvdjref)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cellranger/mkref)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cellranger/multi)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cnvkit/batch)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cellranger/vdj)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (circularmapper/circulargenerator)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (cobrameta)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (controlfreec/freec)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (controlfreec/freec2bed)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (controlfreec/makegraph)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (controlfreec/assesssignificance)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (crabz/compress)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (controlfreec/makegraph2)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (deepvariant)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (controlfreec/freec2circos)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (crabz/decompress)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (decoupler/decoupler)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (fastme)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (deepcell/mesmer)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (ensemblvep/vep)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (dragmap/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (ensemblvep/download)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (fastx/collapser)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (fastp)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/addorreplacereadgroups)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/bedtointervallist)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/germlinecnvcaller)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/cnnscorevariants)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/bedtointervallist)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/combinegvcfs)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/determinegermlinecontigploidy)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/splitncigarreads)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/estimatelibrarycomplexity)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/svannotate)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/postprocessgermlinecnvcalls)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gatk4/svcluster)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gecco/run)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (glimpse/ligate)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (genomescope2)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (glimpse/chunk)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (glimpse/concordance)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (glimpse/phase)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (glimpse2/ligate)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (glimpse/sample)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gtdbtk/classifywf)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gtfsort)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (hmmer/hmmsearch)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (gt/gff3validator)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (htseq/count)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (iqtree)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (igvreports)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (islandpath)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (isoseq3/tag)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (kaiju/mergeoutputs)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (kraken2/add)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (kraken2/kraken2)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (kalign/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (kraken2/build)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (krakentools/extractkrakenreads)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (leviosam2/lift)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (learnmsa/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (leviosam2/index)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (lofreq/viterbi)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (liftoff)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (maltextract)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (manta/germline)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (manta/tumoronly)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (manta/somatic)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (merfin/hist)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (metamaps/mapdirectly)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (meryl/histogram)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (meryl/count)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (meryl/unionsum)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (minimap2/index)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (molkartgarage/clahe)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (minimap2/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (mosdepth)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (mygene)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (ngsbits/samplegender)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (nanofilt)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (openms/peakpickerhires)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (openms/idfilter)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (openms/peptideindexer)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (openms/idmerger)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (picard/addorreplacereadgroups)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (phispy)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (picard/markduplicates)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (plink/epistasis)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (plink/hwe)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (plink/gwas)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (plink/fastepistasis)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (president)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (plink/ld)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (popscle/dscpileup)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (pretextmap)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (prodigal)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (quartonotebook)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (rgi/main)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (pyrodigal)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (scimap/spatiallda)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (rgi/cardannotation)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (samtools/faidx)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (shapeit5/ligate)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (seqfu/stats)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (snpeff/snpeff)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (spaceranger/count)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (spaceranger/mkgtf)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (strelka/somatic)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (spaceranger/mkref)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/bam_create_som_pon_gatk)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (strelka/germline)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/bam_markduplicates_picard)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/fastq_align_dna)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/fastq_align_mapad)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/fastq_align_bowtie2)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/quantify_pseudo_alignment)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/fastq_taxonomic_profile_metaphlan)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/vcf_impute_glimpse)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/fastq_fastqc_umitools_fastp)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (subworkflows/vcf_phase_shapeit5)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (svtyper/svtypersso)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (taxonkit/name2taxid)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (tcoffee/tcs)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (tcoffee/align)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (tiddit/sv)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (toulligqc)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (velocyto)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (vcftools)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (wisecondorx/gender)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (wisecondorx/newref)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (wisecondorx/convert)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (wisecondorx/predict)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (wittyer)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
nf-core-lint (xengsort/index)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
|
|
confirm-pass
Process completed with exit code 1.
|
|
Run tests
Strategy expansion exceeded 256 results for job 'nf-test'
|
|
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|