Merge pull request #375 from genomic-medicine-sweden/fuseq_wes_filtering

feat: add blacklist for fuseq_wes filtering
genomic-medicine-sweden · Nov 24, 2023 · 3b0f6ad · 3b0f6ad
2 parents 823dd79 + 6bc03e3
commit 3b0f6ad
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/config/config.data.hg19.yaml b/config/config.data.hg19.yaml
@@ -69,6 +69,7 @@ exon_skipping:
   design_bed: "{{PROJECT_DESIGN_DATA}}/GMS560/design/Twist_RNA_Design5.annotated.bed"
 
 filter_fuseq_wes:
+  gene_fusion_black_list: "{{PROJECT_DESIGN_DATA}}/GMS560/fuseq_wes/false_positive_fusion_pairs.txt"
   gene_white_list: "{{PROJECT_DESIGN_DATA}}/GMS560/fuseq_wes/fuseq_wes_gene_white_list.txt"
   transcript_black_list: "{{PROJECT_DESIGN_DATA}}/GMS560/fuseq_wes/fuseq_wes_transcript_black_list.txt"
   gtf: "{{PROJECT_REF_DATA}}/ref_data/refGene/hg19.refGene.gtf"