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chore: dev to master #379

Merged
merged 98 commits into from
Dec 1, 2023
Merged

chore: dev to master #379

merged 98 commits into from
Dec 1, 2023

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Smeds
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@Smeds Smeds commented Dec 1, 2023

This PR:

(If this is a release PR, no need to add following. Leave this part empty)
(Use the following lines to create a PR text body. Make sure to remove all non-relevant one after you're done)
(Repeat each field as many times as necessary)

Added: for new features.
Changed: for changes in existing functionality.
Deprecated: for soon-to-be removed features.
Removed: for now removed features.
Fixed: for any bug fixes.
Security: in case of vulnerabilities.

Review and tests:

  • Tests pass
  • If you've fixed a bug or added code that should be tested, add tests!
  • Code review
  • CHANGELOG.md is updated
  • New code is executed and covered by tests, and test approve

Smeds and others added 30 commits November 3, 2023 10:17
…evelop-test

ci: rename test files and change develop test to down sampled files
fix: handle reference creation with unit file containing both T and N
feat: 2 new TERT positions added to report
…ilter

feat: use v0.1.0 of fusion module to filter FP Fuseq_WES calls
jonca79 and others added 27 commits November 24, 2023 08:12
fix: support header with fusions filtering
refactor: move hg19 specific files to data
fix: new rna fusion filter file without duplicate entry and header
fix: change from svdb_query file to svdb_merge file
feat: add blacklist for fuseq_wes filtering
…-validation-files

feat: update to latest files used by config
fix: add missing extra option in star-fusion
@Smeds Smeds requested a review from jonca79 as a code owner December 1, 2023 12:39
@jonca79 jonca79 merged commit 2b8d6de into master Dec 1, 2023
13 checks passed
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2 participants