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hail/hail/python/hail/vds/combiner/variant_dataset_combiner.py
Line 548 in bf3c9da
In the documentation:
branch_factor – The number of Variant Datasets to combine at once. gvcf_batch_size – The number of GVCFs to combine into a Variant Dataset at once.
In this line the number of gVCFs being merged into each vds is step, and the value of step is self.branch_factor, when it should be gvcf_batch_size.
step
gvcf_batch_size
First spotted by @patrick-schultz (https://hail.zulipchat.com/#narrow/channel/123010-Hail-Query-0.2E2-support/topic/gVCF.20Combiner.20Save.20Path.2FPlan/near/492731854)
The text was updated successfully, but these errors were encountered:
chrisvittal
Successfully merging a pull request may close this issue.
hail/hail/python/hail/vds/combiner/variant_dataset_combiner.py
Line 548 in bf3c9da
In the documentation:
In this line the number of gVCFs being merged into each vds is
step
, and the value ofstep
is self.branch_factor, when it should begvcf_batch_size
.First spotted by @patrick-schultz (https://hail.zulipchat.com/#narrow/channel/123010-Hail-Query-0.2E2-support/topic/gVCF.20Combiner.20Save.20Path.2FPlan/near/492731854)
The text was updated successfully, but these errors were encountered: