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Update hmmratac.md
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taoliu authored Oct 30, 2024
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12 changes: 6 additions & 6 deletions docs/source/docs/hmmratac.md
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Expand Up @@ -54,14 +54,14 @@ columns are:
2. start position of the accessible region
3. end position of the accesssible region
4. peak name
5. peak score. The score is the maximum foldchange (signal/average
signal) within the peak. By default, the signal is the total
pileup of all types of fragments from short to tri-nuc size
fragments.
6. Not used
5. peak score. The score is the 10times the maximum foldchange
(signal/average signal) within the peak. By default, the 'signal'
used to calculate foldchange is the total pileup of all types of
fragments from short to tri-nuc size fragments.
7. Not used
8. Not used
9. peak summit position. It's the relative position from the start
9. Not used
10. peak summit position. It's the relative position from the start
position to the peak summit which is defined as the position with
the maximum foldchange score.

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