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Update cellbender and add GPU support #418

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fmalmeida opened this issue Jan 13, 2025 · 1 comment · Fixed by #419
Closed

Update cellbender and add GPU support #418

fmalmeida opened this issue Jan 13, 2025 · 1 comment · Fixed by #419
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enhancement New feature or request

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Description of feature

Update CELLBENDER module to use the latest software version, v0.3.2 and add gpu support as in scdownstream pipeline.
@fmalmeida fmalmeida added the enhancement New feature or request label Jan 13, 2025
@fmalmeida fmalmeida self-assigned this Jan 13, 2025
@fmalmeida fmalmeida linked a pull request Jan 15, 2025 that will close this issue
418 update cellbender and add gpu support #419
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PR was merged to dev. Closing the isse.

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enhancement New feature or request
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418 update cellbender and add gpu support nf-core/scrnaseq
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