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Finalize STAR velocity implementation #417

Merged
merged 4 commits into from
Jan 15, 2025
Merged

Finalize STAR velocity implementation #417

merged 4 commits into from
Jan 15, 2025

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nictru
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@nictru nictru commented Jan 12, 2025

While it was already possible to compute the spliced and unspliced counts, they were not added to the final AnnData object. I added this functionality with this PR

@nictru nictru changed the base branch from master to dev January 12, 2025 09:46
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github-actions bot commented Jan 12, 2025

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@nictru nictru marked this pull request as ready for review January 15, 2025 09:09
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@grst grst left a comment

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Thanks for adding this!

modules/local/templates/mtx_to_h5ad_star.py Show resolved Hide resolved
@nictru nictru merged commit ce6ff07 into nf-core:dev Jan 15, 2025
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@nictru nictru deleted the velocity branch January 15, 2025 19:38
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2 participants