chore: prepare release notes for 0.26.0

release-notes/0.26.0.md

@@ -0,0 +1,36 @@
+# Release notes for cobrapy 0.26.0
+
+## New features
+
+* View number of genes in model notebook representation.
+* added support for Python 3.11
+
+## Fixes
+
+* serializes GPRs to strings to avoid massive storage usage
+* Reformatted example files (e_coli_core.xml, mini_cobra.xml, mini.json, mini.yml, textbook.xml.gz) to be more compliant with identifiers.org.
+* ncbigi is not a valid identifiers.org, so it was replaced with ncbiprotein.
+* make sbml.py subsystem reading add partonomy, which matches the definition
+  of SBO:0000633 (see https://sourceforge.net/p/sbo/term-request/113/)
+* Correct reading and writing of subsystem in mat.
+* General cleanup of code in mat.py
+* fix the pandas deprecation warning in `find_external_compartment`
+* fix an issue where creating a Formula object would give a recursion error
+
+## Other
+
+* Resolve `flake8` issues and add missing type annotations and docstrings in `src/cobra/io` and `tests/test_io` (#1212).
+* Updated model.py and test_model.py to Python 3.6+, including type annotations and docstrings.
+* Resolve remaining `flake8` issues and enable the check in GitHub Actions Lint workflow (#1272).
+
+## Deprecated features
+
+* dropped support for Python 3.6
+
+## Backwards incompatible changes
+* Removed `model.add_reaction()` and replaced remaining usages of it with `model.add_reactions()`
+* Removed the following tests: test_add_remove_reaction_benchmark, test_add_reaction,
+  test_add_reaction_context, test_add_reaction_from_other_model, test_add_cobra_reaction
+* Removed `model.__add__` and `model.__iadd__` - use `model.merge` to replace them.
+* Remove `Model().description()`.
+* Remove `Model().get_metabolite_compartments()`.

release-notes/next-release.md

@@ -2,35 +2,10 @@
 
 ## New features
 
-* View number of genes in model notebook representation.
-* added support for Python 3.11
-
 ## Fixes
 
-* serializes GPRs to strings to avoid massive storage usage
-* Reformatted example files (e_coli_core.xml, mini_cobra.xml, mini.json, mini.yml, textbook.xml.gz) to be more compliant with identifiers.org.
-* ncbigi is not a valid identifiers.org, so it was replaced with ncbiprotein.
-* make sbml.py subsystem reading add partonomy, which matches the definition
-  of SBO:0000633 (see https://sourceforge.net/p/sbo/term-request/113/)
-* Correct reading and writing of subsystem in mat.
-* General cleanup of code in mat.py
-* fix the pandas deprecation warning in `find_external_compartment`
-* fix an issue where creating a Formula object would give a recursion error
-
 ## Other
 
-* Resolve `flake8` issues and add missing type annotations and docstrings in `src/cobra/io` and `tests/test_io` (#1212).
-* Updated model.py and test_model.py to Python 3.6+, including type annotations and docstrings.
-* Resolve remaining `flake8` issues and enable the check in GitHub Actions Lint workflow (#1272).
-
 ## Deprecated features
 
-* dropped support for Python 3.6
-
 ## Backwards incompatible changes
-* Removed `model.add_reaction()` and replaced remaining usages of it with `model.add_reactions()`
-* Removed the following tests: test_add_remove_reaction_benchmark, test_add_reaction,
-  test_add_reaction_context, test_add_reaction_from_other_model, test_add_cobra_reaction
-* Removed `model.__add__` and `model.__iadd__` - use `model.merge` to replace them.
-* Remove `Model().description()`.
-* Remove `Model().get_metabolite_compartments()`.