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Replace inspect.getargspec with inspect.getfullargspec #1446

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Replace inspect.getargspec with inspect.getfullargspec #1446

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cdad159
Replace inspect.getargspec with inspect.getfullargspec
kkaris Jun 5, 2024
c2faf1e
Increase Gilda requirement
bgyori Jun 5, 2024
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2 changes: 1 addition & 1 deletion indra/pipeline/pipeline.py
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Original file line number Diff line number Diff line change
Expand Up @@ -320,7 +320,7 @@ def run_function(self, func_dict, statements=None, **kwargs):
new_kwargs['statements'] = statements
if kwargs:
for k, v in kwargs.items():
if k not in new_kwargs and k in inspect.getargspec(func).args:
if k not in new_kwargs and k in inspect.getfullargspec(func).args:
new_kwargs[k] = v
return self.run_simple_function(func, *new_args, **new_kwargs)

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4 changes: 2 additions & 2 deletions setup.py
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Expand Up @@ -20,15 +20,15 @@ def main():
'trips_offline': ['pykqml'],
'reach_offline': ['cython<3', 'pyjnius==1.1.4'],
'eidos_offline': ['cython<3', 'pyjnius==1.1.4'],
'hypothesis': ['gilda>=0.10.2'],
'hypothesis': ['gilda>1.0.0'],
'geneways': ['stemming', 'nltk<3.6'],
'bel': ['pybel>=0.15.0,<0.16.0'],
'sbml': ['python-libsbml'],
# Tools and analysis
'machine': ['pytz', 'tzlocal', 'tweepy', 'pyyaml>=5.1.0',
'click'],
'explanation': ['kappy==4.1.2', 'paths-graph'],
'grounding': ['adeft', 'gilda>=0.10.2'],
'grounding': ['adeft', 'gilda>1.0.0'],
# AWS interface and database
'aws': ['boto3', 'reportlab'],
# Utilities
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