Missing threads parameter in complexsearch.sh

steineggerlab · May 2, 2024 · 9456381 · 9456381
1 parent 7192be5
commit 9456381
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/data/complexsearch.sh b/data/complexsearch.sh
@@ -24,7 +24,7 @@ if [ "$PREFMODE" != "EXHAUSTIVE" ]; then
     if notExists "${TMP_PATH}/result_expand_aligned.dbtype"; then
         if [ "$COMPLEX_ALIGNMENT_ALGO" = "tmalign" ]; then
             # shellcheck disable=SC2086
-            "$MMSEQS" structurealign "${QUERYDB}" "${TARGETDB}" "${TMP_PATH}/result_expand_pref" "${TMP_PATH}/result_expand_aligned_tmp" -e 100 \
+            "$MMSEQS" structurealign "${QUERYDB}" "${TARGETDB}" "${TMP_PATH}/result_expand_pref" "${TMP_PATH}/result_expand_aligned_tmp" -e 100 ${THREADS_PAR} \
                 || fail $COMPLEX_ALIGNMENT_ALGO "died"
             # shellcheck disable=SC2086
             "$MMSEQS" tmalign "${QUERYDB}" "${TARGETDB}" "${TMP_PATH}/result_expand_aligned_tmp" "${TMP_PATH}/result_expand_aligned" ${COMPLEX_ALIGN_PAR} \