Merge pull request #206 from veg/develop

Develop
veg · Jun 14, 2021 · 43fdfae · 43fdfae
2 parents 50e066e + 31a5d8e
commit 43fdfae
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/app/hyphyjob.js b/app/hyphyjob.js
@@ -82,6 +82,7 @@ hyphyJob.prototype.spawn = function() {
         // No status update could be read,
         // but this could be due to the job just starting
         self.log("read progress file, but no data");
+        self.onStatusUpdate(data);
       }
     });
   });

diff --git a/app/meme/meme.sh b/app/meme/meme.sh
@@ -22,7 +22,7 @@ export HYPHY_PATH=$HYPHY_PATH
 
 trap 'echo "Error" > $STATUS_FILE; exit 1' ERR
 
-echo "mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE"
-mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE
+echo "mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE >> $PROGRESS_FILE"
+mpirun -np $PROCS $HYPHY LIBPATH=$HYPHY_PATH meme --alignment $FN --tree $TREE_FN --code $GENETIC_CODE >> $PROGRESS_FILE
 
 echo "Completed" > $STATUS_FILE