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Create devcontainer.json #95

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merged 7 commits into from
Nov 20, 2023
Merged

Create devcontainer.json #95

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12e001b
Create devcontainer.json
niemasd Nov 11, 2023
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Merge branch 'veg:master' into master
niemasd Nov 11, 2023
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Update Dockerfile
niemasd Nov 13, 2023
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Update Dockerfile
niemasd Nov 13, 2023
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Update Dockerfile
niemasd Nov 13, 2023
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niemasd Nov 20, 2023
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5 changes: 5 additions & 0 deletions .devcontainer/devcontainer.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
{
"build": {
"dockerfile": "../Dockerfile"
}
}
13 changes: 9 additions & 4 deletions Dockerfile
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@@ -1,9 +1,11 @@
# Docker image for HIV-TRACE
FROM ubuntu:20.04
# Docker image for an HIV-TRACE development environment
FROM oraclelinux:8

# Set up environment and install dependencies
RUN apt-get update && apt-get -y upgrade && \
DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get install -y cmake gcc g++ git libcurl4-openssl-dev libssl-dev make python3 python3-pip wget && \
RUN yum -y update && \
yum install -y bzip2-devel cmake gcc gcc-c++ gcc-toolset-10 git libcurl-devel make openssl-devel oracle-epel-release-el8 python3.11 python3.11-devel python3.11-pip wget xz-devel && \
echo 'source /opt/rh/gcc-toolset-10/enable' > ~/.bashrc && \
source ~/.bashrc && \

# Update pip and use it to install Python packages
python3 -m pip install --upgrade pip && \
Expand All @@ -19,3 +21,6 @@ RUN apt-get update && apt-get -y upgrade && \

# Clean up
rm -rf ~/.cache /tmp/* ~/.wget-hsts

# To compile HIV-TRACE within the development environment:
# python3 setup.py develop