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Added 2FAST2Q module#7318

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afombravo wants to merge 47 commits intonf-core:masternf-core/modules:masterfrom afombravo:2FAST2Qafombravo/modules:2FAST2QCopy head branch name to clipboard

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Commits on Jan 16, 2025

• Added 2FAST2Q module

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Commits on Jan 19, 2025

• added tests to 2fast2q

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• added tests to 2fast2q

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• added tests to 2fast2q

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• fixed tests to 2fast2q

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• fixed tests to 2fast2q

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• Merge branch 'master' into 2FAST2Q

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• Update modules/nf-core/fast2q/tests/main.nf.test

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• Update modules/nf-core/fast2q/tests/main.nf.test

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• added optional input - hope it is being parsed correctly

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• added optional input - hope it is being parsed correctly

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• fix

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• fix lack of optional input on tests

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• fixing in progree

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• fixing in progress

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• fixing in progress

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• fixing in progress

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• I changed the test data to 2FAST2Q repo data, NOT NF-CORE test data, just as a way to check if it is working. The test data I was using from NF-core has the wrong input file format.

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• I changed the test data to 2FAST2Q repo data, NOT NF-CORE test data, just as a way to check if it is working. The test data I was using from NF-core has the wrong input file format.

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• I changed the test data to 2FAST2Q repo data, NOT NF-CORE test data, just as a way to check if it is working. The test data I was using from NF-core has the wrong input file format.

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• I changed the test data to 2FAST2Q repo data, NOT NF-CORE test data, just as a way to check if it is working. The test data I was using from NF-core has the wrong input file format.

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• testing if it works with just fastq

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Commits on Jan 20, 2025

• Update modules/nf-core/fast2q/main.nf

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• added test data and fixed several output issues

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• Merge branch 'master' into 2FAST2Q

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• fixed the nf.test

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• fixed the nf.test

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• fixed the module

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• moved test data up

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• direct link to a test data

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• Merge branch 'master' into 2FAST2Q

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• Merge branch 'master' into 2FAST2Q

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• changed paths to tests

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Commits on Jan 22, 2025

• Update modules/nf-core/fast2q/tests/nextflow.config

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• Update modules/nf-core/fast2q/tests/main.nf.test

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• Update modules/nf-core/fast2q/tests/main.nf.test

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• Update modules/nf-core/fast2q/tests/main.nf.test

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Commits on Jan 23, 2025

• changed assertions in test

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• Merge branch 'master' into 2FAST2Q

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• removed indentation on main 2fast2q cmd as it was not being recognized

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• Merge branch '2FAST2Q' of https://github.com/afombravo/modules into 2FAST2Q

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• everything working locally

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• everything working locally

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• everything working locally

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• everything working locally

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• everything working locally

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• everything working locally

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